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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4554796_4555033_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4554796 - 4555033
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGAGTC
5'SS Class:
major
3'SS Sequence:
CTCTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CATGCCCTCACT
Flanking Amino Acid:
KEEAAGGTSPDDAGSQPAAP
Intron Amino Acid Position:
1012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
64.8
40
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.3
0.55
0.7
65.5
30.4
Minor 5ss
34.4
-1.8
3.7
50.7
45.9
Minor BPS
48.3
-0
2.2
69.55
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008349
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008725
4540797 - 4558272
17476