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Intron Name: Anas_platyrhynchos_platyrhynchos_29_4559150_4559512_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4559150 - 4559512

Intron Length:

363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

TGCCGGCCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TCTCCCTCACGA

Flanking Amino Acid:

ARYFGIKRGQVVKIIRPSET

Intron Amino Acid Position:

438

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.7

33.7

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

67.4

0.39

61.8

Minor 5ss

32.8

-2

2.9

39.4

46.1

Minor BPS

46.7

-0.2

2.1

60.78

45.1

Associated Gene:

Gene:

POLR2E

Ensembl Gene ID:

ENSAPLG00000023010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022576

4559069 - 4561696

2628