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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4559592_4559778_R

Intron Information:

Intron Rank:
4
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
4559592 - 4559778
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TGACTCTGTGCAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
TTCTCCTTGACT
Flanking Amino Acid:
KEEVTELLARYKLRENQLPR
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.2
57.8
41.9
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
71.1
0.47
1
65.5
40.8
Minor 5ss
96.3
1.56
0.7
91.7
17.5
Minor BPS
87.4
1.26
0.9
95.4
31.4

Associated Gene:

Gene:
POLR2E
Ensembl Gene ID:
ENSAPLG00000023010
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022576
4559069 - 4561696
2628