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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4559838_4560047_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4559838 - 4560047
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
TGTTGTTTACAG
Flanking Amino Acid:
ELLINITEHELVPEHVVMTK
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
79
0.65
1
72.2
42.7
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
46.6
-0.3
2.1
56.87
44.7

Associated Gene:

Gene:
POLR2E
Ensembl Gene ID:
ENSAPLG00000023010
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022576
4559069 - 4561696
2628