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Intron Name: Anas_platyrhynchos_platyrhynchos_29_4560129_4560514_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4560129 - 4560514

Intron Length:

386

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGAGG

5'SS Class:

major

3'SS Sequence:

TCTTCCTCCGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTGAC

U12 Branch Point Sequence:

GCGGCCTGACTT

Flanking Amino Acid:

QQGMTPSAKQSLVDMAPKYI

Intron Amino Acid Position:

365

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.2

0.36

1.3

55.4

48.8

Major BPS

51.1

0.03

1.2

39.9

Major PPT

81.8

0.71

0.7

76.9

Minor 5ss

36.1

-1.6

3.3

48.9

46.9

Minor BPS

45.8

-0.2

1.8

56.85

46.1

Associated Gene:

Gene:

POLR2E

Ensembl Gene ID:

ENSAPLG00000023010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022576

4559069 - 4561696

2628