Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4567307_4567462_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4567307 - 4567462

Intron Length:

156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGGGTGAA

5'SS Class:

major

3'SS Sequence:

GTTCCTCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAC

U12 Branch Point Sequence:

GAGGCACTGACG

Flanking Amino Acid:

LKTKEKKKQVGIKIPESCVR

Intron Amino Acid Position:

1124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

66.4

34.7

Major BPS

61.3

0.28

52.7

34.2

Major PPT

70.7

0.47

0.8

62.6

34.6

Minor 5ss

25.3

-2.8

3.2

27.1

39.3

Minor BPS

41.3

-0.8

42.27

42.3

Associated Gene:

Gene:

SBNO2

Ensembl Gene ID:

ENSAPLG00000007158

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029855

4565678 - 4620526

54849

ENSAPLT00000007481

4565678 - 4587875

22198

ENSAPLT00000043995

4565678 - 4592122

26445