Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4567893_4568104_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4567893 - 4568104

Intron Length:

212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAGGTGGG

5'SS Class:

major

3'SS Sequence:

CATCCTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

CTGTCTGTAACT

Flanking Amino Acid:

LDSLHKKYRRVLPEEAKEHW

Intron Amino Acid Position:

1035

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.1

47.1

Major BPS

62.2

0.3

1.2

38.7

Major PPT

79.2

0.66

0.8

73.1

31.4

Minor 5ss

30.3

-2.3

3.3

43.1

Minor BPS

61.1

0.43

2.1

79.01

43.8

Associated Gene:

Gene:

SBNO2

Ensembl Gene ID:

ENSAPLG00000007158

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007481

4565678 - 4587875

22198

ENSAPLT00000043995

4565678 - 4592122

26445

ENSAPLT00000029855

4565678 - 4620526

54849