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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4570029_4570443_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4570029 - 4570443
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCGC
5'SS Class:
major
3'SS Sequence:
TCTCCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCCTTTCACA
Flanking Amino Acid:
DLSKYNFENKYGAKALDRVL
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.2
67.1
44.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
83.8
0.76
0.7
78.9
26.6
Minor 5ss
40.1
-1.1
2.9
53.8
43.2
Minor BPS
62
0.37
1.8
72.26
40.2

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849
ENSAPLT00000007481
4565678 - 4587875
22198