Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4571155_4571336_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4571155 - 4571336

Intron Length:

182

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CACGTCCCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

TCTCCCTTCACT

Flanking Amino Acid:

WSADRAIQQFGRTHRSNQVY

Intron Amino Acid Position:

757

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

75.3

34.6

Major BPS

0.87

0.8

85.6

Major PPT

65.7

0.35

0.8

58.6

32.7

Minor 5ss

30.4

-2.2

3.2

42.4

44.3

Minor BPS

70.7

0.73

1.8

85.35

Associated Gene:

Gene:

SBNO2

Ensembl Gene ID:

ENSAPLG00000007158

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007481

4565678 - 4587875

22198

ENSAPLT00000043995

4565678 - 4592122

26445

ENSAPLT00000029855

4565678 - 4620526

54849