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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4571473_4571742_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4571473 - 4571742
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCCTTCTCACGT
Flanking Amino Acid:
EKERFMNGEKLVAIISEASS
Intron Amino Acid Position:
712

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.4
0.64
0.7
77.7
24.3
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
42.8
-0.4
2
54.4
47.7

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007481
4565678 - 4587875
22198
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849