Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4572247_4572779_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4572247 - 4572779

Intron Length:

533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

GTGGCTTTAAAA

Flanking Amino Acid:

TYNGFAAEDRSNFHMLPSQK

Intron Amino Acid Position:

609

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

26.3

Major BPS

73.1

0.58

79.6

29.1

Major PPT

85.8

0.81

0.7

80.7

24.6

Minor 5ss

36.1

-1.6

3.3

49.4

41.3

Minor BPS

59.5

0.29

1.5

65.01

41.5

Associated Gene:

Gene:

SBNO2

Ensembl Gene ID:

ENSAPLG00000007158

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029855

4565678 - 4620526

54849

ENSAPLT00000007481

4565678 - 4587875

22198

ENSAPLT00000043995

4565678 - 4592122

26445