About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4574036_4576402_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4574036 - 4576402
Intron Length:
2367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
ATCTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGCATCTTACTT
Flanking Amino Acid:
GHLNCFVSAAEGVFLSLIQK
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
70
32.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81.6
0.71
0.8
78.2
34.6
Minor 5ss
35.3
-1.7
2.8
36.5
41.7
Minor BPS
53.9
0.2
1.7
68.53
42.9

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849
ENSAPLT00000007481
4565678 - 4587875
22198