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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4576501_4576919_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4576501 - 4576919
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGTAT
5'SS Class:
major
3'SS Sequence:
TGTCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
GTGGTGCCACCC
Flanking Amino Acid:
LAKEELAKDKCIVIGLQSTG
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
73.5
33
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
76
0.58
0.8
70
30.9
Minor 5ss
39
-1.2
3.3
54.5
49.7
Minor BPS
31.3
-1.4
2.2
38.97
40

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849
ENSAPLT00000007481
4565678 - 4587875
22198