About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4578245_4578701_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4578245 - 4578701
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
GTTTTGCTAACA
Flanking Amino Acid:
QARVVYASATGASEPKNMIY
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
70.5
0.46
1
66.4
38.7
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
50.9
0.02
2.3
72.44
39.4

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849
ENSAPLT00000007481
4565678 - 4587875
22198