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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4578820_4579338_R

Intron Information:

Intron Rank:
8
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
4578820 - 4579338
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CGTTACCTTGCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTCTCCTTAACC
Flanking Amino Acid:
DWCRENFDGVIVFDECHKAK
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
57.1
42.4
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
77.1
0.61
0.9
69.7
36.3
Minor 5ss
98.8
1.64
0.5
96
12.5
Minor BPS
89.9
1.23
0.9
90.58
30.6

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849
ENSAPLT00000007481
4565678 - 4587875
22198