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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4579483_4580814_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4579483 - 4580814
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCACAA
U12 Branch Point Sequence:
AGCACCTGCACT
Flanking Amino Acid:
SHIPVHALNKIKYGDTATSE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
63.9
42.4
Major BPS
50.7
0.02
1.2
61
37.5
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
27.2
-2.6
3.7
36.3
48.1
Minor BPS
48
-0
2
65.05
44.8

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007481
4565678 - 4587875
22198
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849