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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4581565_4582004_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4581565 - 4582004
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTGATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTGATTAATT
Flanking Amino Acid:
QLEAIIYACQQHEVLLPNGQ
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
80.3
0.68
0.9
73.7
40.9
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
60.6
0.41
2
80.74
41.5

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007481
4565678 - 4587875
22198
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849