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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4583254_4587610_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4583254 - 4587610
Intron Length:
4357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGGAT
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGCTCTCTGACC
Flanking Amino Acid:
VNTSQQNQIELFSPSRSFGG
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.5
39
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
84.4
0.77
0.8
76.5
37.6
Minor 5ss
29.2
-2.4
3.8
46
49.3
Minor BPS
56.8
0.19
1.7
67.13
38.7

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043995
4565678 - 4592122
26445
ENSAPLT00000029855
4565678 - 4620526
54849
ENSAPLT00000007481
4565678 - 4587875
22198