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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4587776_4587872_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4587776 - 4587872
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CCTCCTCTAACT
Flanking Amino Acid:
MDASYLDELSN
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
78.6
30
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
29.8
-2.3
3
37.3
41.2
Minor BPS
58.2
0.34
1.7
73.75
43.2

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007481
4565678 - 4587875
22198