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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4601837_4607477_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4601837 - 4607477
Intron Length:
5641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
CATTTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATTTCCTTACAG
Flanking Amino Acid:
FPTSSFLSENQQYFNSPHDF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
34.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
83.3
0.75
0.8
76.7
31.7
Minor 5ss
29.7
-2.3
3.1
38.1
40.6
Minor BPS
64.5
0.32
1.8
71.23
41.5

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029855
4565678 - 4620526
54849