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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4607558_4608593_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4607558 - 4608593
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
ACCTCTGTAACC
Flanking Amino Acid:
RSQLAVPAMENSMLAADSWS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
87.4
0.84
0.7
84.9
30
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
54.1
0.11
2
63.77
42.5

Associated Gene:

Gene:
SBNO2
Ensembl Gene ID:
ENSAPLG00000007158
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029855
4565678 - 4620526
54849