About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4632627_4636288_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
4632627 - 4636288
Intron Length:
3662

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
AAT|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACTCTGCCTTCAC|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GCTTCCTTAACT
Flanking Amino Acid:
DVLYNEEKQKMYMVMEYCVC
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
33.9
-1
3.4
55.3
44.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
41.9
-0.4
3.2
62.4
39.2
Minor 5ss
96.4
1.54
0.8
90.9
28.7
Minor BPS
88
1.28
1
92.9
35.6

Associated Gene:

Gene:
STK11
Ensembl Gene ID:
ENSAPLG00000006968
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007269
4626502 - 4660348
33847