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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4636379_4637530_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4636379 - 4637530
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACAATTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
EKRFPVFQAHGYFCQLIDGL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
72.8
0.51
0.9
66.1
39.9
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
STK11
Ensembl Gene ID:
ENSAPLG00000006968
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007269
4626502 - 4660348
33847