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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4638282_4638785_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4638282 - 4638785
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTTCTCACAC
Flanking Amino Acid:
KVDIWSAGVTLYNITTGLYP
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
88.3
0.86
0.7
83.7
24.4
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
48.6
-0.1
1.9
63.16
42.4

Associated Gene:

Gene:
STK11
Ensembl Gene ID:
ENSAPLG00000006968
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007269
4626502 - 4660348
33847