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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4638914_4645412_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4638914 - 4645412
Intron Length:
6499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CACACCTGGACT
Flanking Amino Acid:
CGPPLSDLLRGMLEYDPAKR
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
89.3
0.88
0.6
87.7
22.4
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
53.3
0.18
1.6
65.64
44.7

Associated Gene:

Gene:
STK11
Ensembl Gene ID:
ENSAPLG00000006968
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007269
4626502 - 4660348
33847