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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4645471_4652340_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4645471 - 4652340
Intron Length:
6870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GGACTCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGCTCTTGGACT
Flanking Amino Acid:
RFSIQQIRQHNWFRKKHAQA
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
84.1
26.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
72.8
0.51
1
65.5
40.8
Minor 5ss
34.9
-1.7
3.4
49.4
41.3
Minor BPS
62.7
0.48
1.5
76.48
40.3

Associated Gene:

Gene:
STK11
Ensembl Gene ID:
ENSAPLG00000006968
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007269
4626502 - 4660348
33847