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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4652535_4658754_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4652535 - 4658754
Intron Length:
6220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
GCTCCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CCGGCCTGACGC
Flanking Amino Acid:
IIYTQDFTVPGQVPEEEAGQ
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
76.5
0.6
0.8
69.2
31.3
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
40.2
-0.7
2
41.89
45.2

Associated Gene:

Gene:
STK11
Ensembl Gene ID:
ENSAPLG00000006968
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007269
4626502 - 4660348
33847