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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4699477_4701373_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4699477 - 4701373
Intron Length:
1897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TTTACCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
CCCATTTTACCC
Flanking Amino Acid:
QSQIRMCKPSGDRLRQTENR
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
76.5
0.6
0.8
70.3
30.4
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
46.8
-0.2
1.6
49.14
42.1

Associated Gene:

Gene:
MIDN
Ensembl Gene ID:
ENSAPLG00000028424
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039730
4697801 - 4701636
3836