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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4778658_4778747_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4778658 - 4778747
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTTTTTTTATAG
Flanking Amino Acid:
VFSKYGQISEVVVVKDRETQ
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
87.2
0.84
0.6
83.2
25.3
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
51.3
-0.1
1.8
59.45
42.9

Associated Gene:

Gene:
CIRBP
Ensembl Gene ID:
ENSAPLG00000016807
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046413
4775910 - 4779595
3686
ENSAPLT00000028598
4776216 - 4779595
3380
ENSAPLT00000025687
4776216 - 4779595
3380