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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4794235_4794479_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4794235 - 4794479
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
GGTGACAGACCT
Flanking Amino Acid:
PYAAKILKKTIDKKIVRTEI
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
81.3
0.7
0.8
72.4
37.8
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
39.4
-0.7
2
56.75
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026984
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020427
4794082 - 4801562
7481