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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4796842_4797218_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4796842 - 4797218
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATGTCC
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
CCTTTCTGCATT
Flanking Amino Acid:
VVKQILEAVSYLHENGVVHR
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
60.7
39
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
84.7
0.78
0.7
80.7
24.5
Minor 5ss
38.5
-1.3
3.2
52.2
44.6
Minor BPS
49
0
1.9
67.49
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026984
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020427
4794082 - 4801562
7481