Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4797310_4797460_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4797310 - 4797460

Intron Length:

151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGGGTTTG

5'SS Class:

major

3'SS Sequence:

TGTGTCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGGCAG

U12 Branch Point Sequence:

GTTCCCGGCAGT

Flanking Amino Acid:

DLSPDAPLKIGDFGLSKIVD

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

66.1

42.1

Major BPS

34.6

-0.9

1.5

34.4

42.4

Major PPT

72.1

0.5

0.9

62.7

39.7

Minor 5ss

37.5

-1.4

3.2

47.2

Minor BPS

39.5

-0.7

2.6

62.98

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026984

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020427

4794082 - 4801562

7481