Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4798767_4798963_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4798767 - 4798963

Intron Length:

197

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGCAA

5'SS Class:

major

3'SS Sequence:

CCTTTGCCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

CCTTCTCTGATG

Flanking Amino Acid:

QEFNARRKLKAAMKAVVASS

Intron Amino Acid Position:

299

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.6

1.2

65.8

41.7

Major BPS

0.72

38.9

Major PPT

71.2

0.48

0.9

65.8

34.8

Minor 5ss

35.6

-1.6

3.3

48.3

Minor BPS

49.1

-0.2

1.7

54.25

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026984

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020427

4794082 - 4801562

7481