About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4802925_4803031_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4802925 - 4803031
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTCCG
5'SS Class:
major
3'SS Sequence:
TCTTTTTCGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
TTCGTTAAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.2
58.3
46.2
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
83.3
0.75
0.9
84.6
30.3
Minor 5ss
29.5
-2.3
2.8
33.8
41.5
Minor BPS
46.4
-0.1
2
67.32
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022618
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033669
4802864 - 4807265
4402