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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4803656_4804207_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4803656 - 4804207
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
GTTGTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTCAATTAACT
Flanking Amino Acid:
LEVEIFGLKEKVSVKSADTV
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
71.8
34.1
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
81.3
0.71
0.9
77.7
40.6
Minor 5ss
39.5
-1.2
3.5
55
43.9
Minor BPS
67.2
0.62
1.8
88.42
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022618
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033669
4802864 - 4807265
4402