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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4811119_4811532_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4811119 - 4811532
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCCG
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATCACAGACT
Flanking Amino Acid:
HQTPAADHADSSLQVQQKSS
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
57.9
46.7
Major BPS
80
0.75
1
78.6
31
Major PPT
80.2
0.68
0.8
77.9
36.6
Minor 5ss
36.6
-1.5
3.3
48.4
47.3
Minor BPS
44.9
-0.3
2.2
67.18
43

Associated Gene:

Gene:
NDUFS7
Ensembl Gene ID:
ENSAPLG00000005967
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006195
4810266 - 4813974
3709