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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4813386_4813748_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4813386 - 4813748
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAGTAC
U12 Branch Point Sequence:
CTTCCTTTTTCC
Flanking Amino Acid:
RIVPVDIYVPGCPPTAEALL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
45
-0.3
1.4
39.7
40.1
Major PPT
86.1
0.81
0.6
85
22.7
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
41
-0.7
3.5
63.67
42.2

Associated Gene:

Gene:
NDUFS7
Ensembl Gene ID:
ENSAPLG00000005967
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006195
4810266 - 4813974
3709