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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4814831_4815099_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4814831 - 4815099
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
TCTTCCCTCGCA
Flanking Amino Acid:
KYTDIEKMFEETQVPHLVEA
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
82.1
0.72
0.7
76.9
25
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
40.1
-0.7
3.7
67.89
44.5

Associated Gene:

Gene:
GAMT
Ensembl Gene ID:
ENSAPLG00000019872
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039539
4811449 - 4816332
4884