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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4839102_4841035_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4839102 - 4841035
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CATTTCTTACTA
Flanking Amino Acid:
AQPEFPYSQFGLGTYSQDPS
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
73.1
0.52
0.9
67.1
38.8
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
60.8
0.33
1.6
67.46
39.7

Associated Gene:

Gene:
DAZAP1
Ensembl Gene ID:
ENSAPLG00000005606
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005834
4822611 - 4841124
18514