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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_4839102_4843287_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4839102 - 4843287
Intron Length:
4186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGCCTTTTATTT
Flanking Amino Acid:
AQPEFPYSQFGYGQDLSGFG
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80
0.68
0.7
72.7
32.1
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
50.2
0.08
1.5
65.03
40.3

Associated Gene:

Gene:
DAZAP1
Ensembl Gene ID:
ENSAPLG00000005606
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020856
4822089 - 4843554
21466