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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_506161_506765_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
506161 - 506765
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GTGCCCTTATTT
Flanking Amino Acid:
TTVEQESKRSELQFWAIILI
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
86.5
0.82
0.8
80.9
31
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
61.3
0.43
1.6
74.25
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001197
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001209
505004 - 516642
11639