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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_507088_507738_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
507088 - 507738
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCCCATAACA
Flanking Amino Acid:
YFAGCNVESFGPVHGKAYVS
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68
42.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.81
0.8
77.4
36.6
Minor 5ss
42.5
-0.8
2.8
51.6
44.8
Minor BPS
69.1
0.6
1.6
79.36
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001197
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001209
505004 - 516642
11639