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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_511002_511332_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
511002 - 511332
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTGTCCTAAACA
Flanking Amino Acid:
VYIGCKVMRFRSGRDMDNTG
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.4
0.48
0.9
70.5
34.9
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
69.4
0.6
1.7
76.05
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001197
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001209
505004 - 516642
11639