Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_511887_512431_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

511887 - 512431

Intron Length:

545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAATGCA

5'SS Class:

major

3'SS Sequence:

ACTTCCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTTACATAATG

Flanking Amino Acid:

KLDNKSLYINGYNEPLERSS

Intron Amino Acid Position:

374

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

70.1

33.9

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

82.4

0.73

0.8

73.4

36.4

Minor 5ss

32.5

-2

3.2

38.3

41.8

Minor BPS

62.4

0.25

1.9

73.61

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001209

505004 - 516642

11639