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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_512605_512897_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
512605 - 512897
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
DFIGCKAIGFRSMGTSDNTA
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.9
0.67
0.8
77.6
36.3
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001197
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001209
505004 - 516642
11639