About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_513198_513391_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
513198 - 513391
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATCT
Flanking Amino Acid:
NDYNEPHALSLVKPSTTQSP
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
67.7
0.63
1.6
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001197
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001209
505004 - 516642
11639