About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_513874_514058_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
513874 - 514058
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ATATCCTTAAAA
Flanking Amino Acid:
IYIGCRIMAFRSKEDRDDTE
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
72.3
0.5
0.8
64.7
36.1
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
77.7
0.86
1.3
80.6
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001197
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001209
505004 - 516642
11639