Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_514376_514649_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

514376 - 514649

Intron Length:

274

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTGCTCTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ATATTTTCAAAC

Flanking Amino Acid:

NGYNELQPGLFIDQSTKHLS

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.5

28.5

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

85.5

0.8

79.9

32.1

Minor 5ss

40.8

-1

2.8

57.5

39.6

Minor BPS

52.6

0.06

1.6

62.91

36.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001197

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001209

505004 - 516642

11639