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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_514677_515269_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
514677 - 515269
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGTTTCTCAAAT
Flanking Amino Acid:
RLDAASFYVNGYNELQPGLF
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.1
0.56
0.8
65.5
30.4
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
61
0.42
1.6
76.88
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001197
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001209
505004 - 516642
11639