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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_551796_552148_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
551796 - 552148
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
CCTCCCTCAGGG
Flanking Amino Acid:
EDDPEDVTYEPSDLETDSEE
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.1
39.9
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
81.2
0.7
0.7
73.5
31.5
Minor 5ss
44.5
-0.6
3.2
64.5
46.9
Minor BPS
42.3
-0.7
2.1
44.75
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011688
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012159
550762 - 553470
2709